Herd: sci-biology

Package gentoo overlays upstream gentoo overlays upstream freshness
sci-biology/trnascan-se
1.23 2 0 0 100
sci-biology/maq
0.7.1 2 0 0 100
sci-biology/velvet
1.0.18 1.2.10 1 0 1 50
sci-biology/argo
1.0.24 0 1 0 100
sci-biology/gbench
2.3.2 2.4.0 0 1 1 50
sci-biology/embassy-mse
1.0.0 3.0.0 2 1 0 100
sci-biology/est2uni
9999 0 2 0 100
sci-biology/vienna-rna
2.1.1 2 0 0 100
sci-biology/phred
071220 1 0 0 100
sci-biology/clustalx
2.1 1 0 0 100
sci-biology/mcl
12.135 2 0 0 100
sci-biology/iqpnni
3.3.2 3 0 0 100
sci-biology/hmmer
3.0 3 0 0 100
sci-biology/embassy-domalign
0.1.0 0.1.0 2 1 0 100
sci-biology/ariadne
1.3 2 0 0 100
sci-biology/treeviewx
0.5.1 1 0 0 100
sci-biology/zmsort
110625 0 1 0 100
sci-biology/clustalw-mpi
0.13 1 0 0 100
sci-biology/bwa
0.6.2 unstable 0.7.5_alpha 5 0 6 45
sci-biology/jalview
2.6.1 0 1 0 100
sci-biology/goby-cpp
2.0.1 2.3 3 0 5 38
sci-biology/mafft
7.046 8 0 0 100
sci-biology/blat
34 35 2 0 1 67
sci-biology/rmblast
1.2 2 0 0 100
sci-biology/glimmer
3.02 2 0 0 100
sci-biology/repeatmasker-libraries
20120418 1 0 0 100
sci-biology/Gambit
0.4.145 0 1 0 100
sci-biology/ucsc-genome-browser
260 284 2 0 1 67
sci-biology/bambus
2.33 0 1 0 100
sci-biology/prints
39.0 1 0 0 100
sci-biology/seaview
4.3.5 4.4.0 2 0 1 67
sci-biology/embassy-domainatrix
0.1.0 0.1.0 2 1 0 100
sci-biology/swissknife
1.67 0 1 0 100
sci-biology/goby
1.9.8.1 2.3 2 0 5 29
sci-biology/meme
4.8.1 1 0 0 100
sci-biology/allpaths
3.1 3 0 0 100
sci-biology/wcd
0.6.0 0 1 0 100
sci-biology/infernal
1.0.2 1 0 0 100
sci-biology/cdbfasta
0.1 0 1 0 100
sci-biology/stride
20011129 2 0 0 100
sci-biology/bioperl-network
1.6.9 3 0 0 100
dev-perl/Bio-DB-Das-Chado
0.32 0 1 0 100
dev-perl/Time-Progress
1.7 0 1 0 100
sci-biology/bioperl-run
1.6.9 3 0 0 100
sci-biology/mammoth
1.0 1 0 0 100
sci-biology/mauve
9999 1 0 0 100
sci-biology/recon
1.06 2 0 0 100
sci-biology/pals
1.0 1 0 0 100
sci-biology/argo-bin
1.0.31 0 1 0 100
sci-biology/sibsim4
0.20 1 0 0 100
sci-biology/readseq
20080420 1 0 0 100
sci-biology/tgicl
2.1 0 1 0 100
sci-biology/dawg
1.1.1 1.1.2 0 1 1 50
sci-biology/pilercr
1.0 1 0 0 100
sci-biology/cutg
160 2 0 0 100
sci-biology/vaal
46233 4 0 0 100
sci-biology/ncbi-tools
2.2.26 1 0 0 100
sci-biology/rnaplex
0.2 0 1 0 100
sci-biology/shrimp
2.2.3 2 0 0 100
sci-biology/embassy-esim4
1.0.0 1.0.0 2 1 0 100
sci-biology/artemis-bin
13.2.12 13.3.0 0 1 1 50
sci-biology/arb
5.3 5.5 3 0 1 75
sci-biology/clustal-omega
1.1.0 2 0 0 100
sci-biology/cd-hit
4.6 3 0 0 100
sci-biology/rnaview
20040713 3 0 0 100
sci-biology/picard
1.63 2 0 0 100
sci-biology/t-coffee
9.03.1318 3 0 0 100
sci-biology/bamtools
2.2.3 9999 2 1 0 100
sci-biology/last
230 5 0 0 100
sci-biology/bedtools
2.16.2 2.17.0 1 0 1 50
sci-biology/fastdnaml
1.2.2 0 1 0 100
sci-biology/blossoc
1.4.0 1 0 0 100
sci-biology/embassy-structure
0.1.0 0.1.0 2 1 0 100
sci-biology/probcons
1.12 3 0 0 100
dev-perl/Log-Cabin
0.06 0 1 0 100
sci-biology/twinscan
4.1.2 0 1 0 100
sci-biology/lagan
2.0 2 0 0 100
sci-biology/embassy-emnu
1.05 1.05 2 1 0 100
sci-biology/lucy
1.20 0 1 0 100
sci-biology/generecon
1.2.1 0 1 0 100
sci-biology/merlin
1.1.2 0 1 0 100
sci-biology/poa
2 2 0 0 100
sci-biology/primer3
2.3.5 3 0 0 100
sci-biology/embassy-cbstools
1.0.0 1.0.0 2 1 0 100
sci-biology/dialign-tx
1.0.2 2 0 0 100
sci-biology/ONTO-PERL
1.31 0 1 0 100
sci-biology/bioruby
1.4.2 1.4.3.0001 5 0 2 71
sci-biology/prodigal
2.60 2 0 0 100
sci-biology/snpfile
2.0.1 2 0 0 100
sci-biology/miranda
3.3a 0 1 0 100
sci-biology/apollo
9999 0 1 0 100
sci-biology/fasta
36.3.5e 2 0 0 100
sci-biology/cap3-bin
20071221 0 1 0 100
sci-biology/bioperl-db
1.6.9 3 0 0 100
sci-biology/vcftools
0.1.8 0.1.11 2 0 3 40
sci-biology/tophat
2.0.8 5 0 0 100
sci-biology/estscan
3.0.3 0 1 0 100
sci-biology/phyml
2.4.5 1 0 0 100
sci-biology/augustus
2.5.5 1 0 0 100
sci-biology/sclust
0.1 0 1 0 100
sci-biology/perlprimer
1.1.17 1.1.21 0 1 4 20
sci-biology/mummer
3.22 3.23 3 0 1 75
sci-biology/exonerate
2.2.0 2.3.0 2 0 1 67
sci-biology/elph
1.0.1 2 0 0 100
sci-biology/autoeditor
1.20 0 1 0 100
sci-biology/staden
unstable 2.0.0_beta9 0 2 0 100
sci-biology/cufflinks
1.3.0 2.1.1 1 0 5 17
sci-biology/embassy-iprscan
4.3.1 4.3.1 2 1 0 100
sci-biology/maqview
0.2.5 3 0 0 100
sci-biology/mrbayes
3.1.2 3.1.2 3.2.1 1 1 2 50
sci-biology/sff_dump
1.04 0 1 0 100
sci-biology/tigr-assembler
2.0 0 1 0 100
sci-biology/newick-utils
1.5.0 2 0 0 100
sci-biology/psx
0.1 0 1 0 100
sci-biology/align_to_scf
1.06 0 1 0 100
sci-biology/tmhmm
2.0c 0 1 0 100
sci-biology/abyss
1.3.4 5 0 0 100
sci-biology/beast-mcmc
1.7.5 3 0 0 100
sci-biology/erpin
5.5b 0 1 0 100
sci-biology/iedera
1.04 1.05 1 0 1 50
sci-biology/kalign
2.03 2 0 0 100
sci-biology/tclust
110625 0 1 0 100
sci-biology/bioperl
1.6.9 1.600.901 3 0 1 75
sci-biology/consed-bin
20 0 1 0 100
sci-biology/piler
1.0 1 0 0 100
dev-perl/go-perl
0.13 0 1 0 100
sci-biology/raxml
7.2.6 1 0 0 100
sci-biology/brat
1.1.13 1.2.4 0 1 11 8
sci-biology/phrap
1.080812 1 0 0 100
sci-biology/embassy-domsearch
0.1.0 0.1.0 2 1 0 100
sci-biology/rebase
1303 3 0 0 100
sci-biology/cluster
1.50 0 2 0 100
sci-biology/mrsfast
2.3.0.2 2.5.0.4 0 1 2 33
sci-biology/seqclean
110625 0 1 0 100
sci-biology/samtools
0.1.18 4 0 0 100
sci-biology/clustalw
2.1 5 0 0 100
sci-biology/embassy-hmmer
2.3.2 2.3.2 2 1 0 100
sci-biology/sra_sdk
2.2.2a 2.3.1 0 3 1 75
dev-perl/Bio-BigFile
1.06 0 1 0 100
sci-biology/OBO-Edit
2.1.1.6 0 2 0 100
sci-biology/nrcl
110625 0 1 0 100
sci-biology/allpathslg
42337 1 0 0 100
sci-biology/sim4
20030921 2 0 0 100
sci-biology/eugene
4.1 3 0 0 100
sci-biology/proda
1.0 0 1 0 100
sci-biology/paml
4.4c 1 0 0 100
sci-libs/libgenome
1.3 2 0 0 100
sci-biology/gmap
2012.07.20 2 0 0 100
sci-biology/mauvealigner
9999 1 0 0 100
sci-libs/libmuscle
3.7 3 0 0 100
sci-biology/genepop
4.0.10 0 1 0 100
sci-biology/amos-short
0.9.3 0 1 0 100
sci-biology/tree-puzzle
5.2 1 0 0 100
sci-biology/repeatmasker
4.0.1 1 0 0 100
sci-biology/mrfast
2.1.0.3 2.6.0.1 0 1 12 8
sci-biology/amos
3.1.0 9999 1 1 0 100
sci-biology/ncbi-tools++
0.2010.06.15 9.0.0 1 2 0 100
dev-perl/DBIx-DBStag
0.12 0 1 0 100
sci-biology/blasr
9999 0 1 0 100
sci-libs/libmems
1.6_p1 3 0 0 100
sci-biology/grappa
2.0 0 1 0 100
sci-biology/wise
unstable 2.4.0_alpha 2 0 0 100
sci-biology/foldingathome
7.3.6 1 0 0 100
dev-perl/go-db-perl
0.04 0 1 0 100
sci-libs/lemon
1.2.3 0 1 0 100
sci-biology/gap2caf
2.1.0 0 1 0 100
sci-biology/transfac
3.2 1 0 0 100
dev-perl/BTLib
0.19 0 1 0 100
sci-biology/manatee-igs
2.23.1 0 1 0 100
dev-python/go-parser
9999 0 1 0 100
sci-biology/pysam
0.6 0.7.4 1 0 5 17
sci-biology/roche454ace2caf
20100812 0 1 0 100
sci-biology/profphd
1.0.39 1 0 0 100
sci-biology/mavid
2.0.4 0 1 0 100
sci-biology/artemis
9999 0 1 0 100
sci-biology/libgtextutils
0.6 0 1 0 100
sci-biology/bfast
0.7.0a 1 0 0 100
sci-biology/phylip
3.69 3 0 0 100
sci-biology/igv
2.0.32 0 1 0 100
dev-perl/librg-utils-perl
1.0.43 1 0 0 100
sci-libs/profphd-utils
1.0.10 1 0 0 100
sci-libs/profnet
1.0.22 1 0 0 100
sci-biology/consed
19 20 2 1 0 100
sci-biology/trf
4.04 1 0 0 100
sci-biology/express
0.9.5 1.3.1 1 0 8 11
dev-perl/Text-ParseWords
3.27 0 1 0 100
sci-biology/tablet-bin
1.13.05.17 0 1 0 100
sci-biology/quicktree
1.1 0 1 0 100
sci-biology/gbrowse
2.48 0 3 0 100
sci-biology/gatk
2.4 2 0 0 100
sci-biology/njplot
2.3 1 0 0 100
sci-biology/genseed
1.0.22 0 1 0 100
sci-biology/embassy
6.1.0 6.3.1 2 1 0 100
sci-biology/biogrep
1.0 2 0 0 100
sci-biology/finchtv
1.3.1 1 0 0 100
sci-biology/gibbs
3.1 1 0 0 100
sci-biology/prank
111130 130410 2 0 1 67
sci-biology/biopython
1.61 4 0 0 100
sci-biology/qrna
2.0.3c 1 0 0 100
sci-biology/prosite
20.72 4 0 0 100
sci-biology/wgs-assembler
7.0 4 0 0 100
sci-biology/mothur
1.27.0 4 0 0 100
sci-biology/bowtie
0.12.8 1.0.0 4 0 2 67
sci-biology/yass
1.14 2 0 0 100
sci-biology/muscle
3.8.31 4 0 0 100
sci-biology/fasttree
2.0.1 1 0 0 100
sci-biology/embassy-vienna
1.7.2 1.7.2 2 1 0 100
sci-biology/embassy-signature
0.1.0 0.1.0 2 1 0 100
sci-biology/embassy-mira
2.8.2 2 0 0 100
sci-biology/biosql
1.0.1 1 0 0 100
sci-biology/glimmerhmm
3.0.1 3.0.2 1 0 1 50
sci-biology/seqan
1.3.1 1 0 0 100
sci-biology/signalp
3.0 0 1 0 100
sci-biology/caftools
2.0.2 0 1 0 100
sci-biology/mosaik
1.0.1388 2.1.33 2.1.73 2 3 1 83
sci-biology/unafold
3.8 2 0 0 100
dev-python/GOGrapher
9999 0 1 0 100
sci-biology/aaindex
9.1 1 0 0 100
sci-biology/mreps
2.5 0 1 0 100
sci-biology/amap
2.2 1 0 0 100
sci-biology/codonw
1.4.4 0 1 0 100
sci-biology/tigr-foundation-libs
2.0 0 1 0 100
sci-biology/diya
unstable 1.0_rc4 1 0 0 100
sci-biology/plink
1.07 2 0 0 100
sci-biology/embassy-phylipnew
3.68 3.69 2 1 0 100
sci-biology/embassy-topo
1.0.0 2.0.0 2 1 0 100
sci-biology/embassy-memenew
4.0.0 2 0 0 100
sci-biology/clview
0.1 0 1 0 100
sci-biology/emboss
6.3.1_p4 6.3.1_p4 4 1 0 100
sci-biology/mira
3.4.0.2 3.9.15 3.9.17 3 4 1 88
sci-biology/psipred
3.3 4 0 0 100
sci-biology/YASRA
2.32 0 1 0 100
sci-biology/clover
2011.10.24 0 1 0 100
sci-biology/cutadapt
1.2.1 0 1 0 100
sci-biology/sequin
20121202 0 1 0 100
sci-biology/smalt-bin
0.7.4 0 1 0 100
sci-biology/ssaha2-bin
2.5.5 0 1 0 100
sci-visualization/circos
0.55 0.56 2 0 1 67
sci-biology/uchime
4.2.40 1 0 0 100
dev-python/opal-client
2.4.1 0 1 0 100
sci-biology/lastz
1.03.34 0 1 0 100
sci-biology/GBrowse
2.48 2.540.0 2 0 6 25

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